Variant report

Variant	rs7074328
Chromosome Location	chr10:21741124-21741125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21738096..21741227-chr10:21742837..21745484,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047291	0.91[EUR][1000 genomes]
rs10047346	0.89[EUR][1000 genomes]
rs10082390	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828243	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11012716	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11012717	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11592490	0.80[ASN][1000 genomes]
rs11592976	0.80[ASN][1000 genomes]
rs11594201	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11594724	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11596452	0.83[ASN][1000 genomes]
rs12248483	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12249704	0.88[EUR][1000 genomes]
rs12776687	0.87[EUR][1000 genomes]
rs16921815	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2360051	0.81[ASN][1000 genomes]
rs34017213	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34449603	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs58747541	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482181	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66491474	0.80[ASN][1000 genomes]
rs67206878	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7067553	0.84[EUR][1000 genomes]
rs7070904	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7080252	0.91[EUR][1000 genomes]
rs7098776	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72794816	0.80[ASN][1000 genomes]
rs7895825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899812	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7900593	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7912634	0.86[EUR][1000 genomes]
rs7922464	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs959652	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9664320	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21738600-21762000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links