Variant report

Variant	rs12427817
Chromosome Location	chr13:93718515-93718516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2082818	0.82[ASN][1000 genomes]
rs2082819	0.82[ASN][1000 genomes]
rs2840032	0.82[ASN][1000 genomes]
rs306684	0.81[ASN][1000 genomes]
rs5008536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61976291	0.90[ASN][1000 genomes]
rs7996591	0.82[ASN][1000 genomes]
rs9516151	0.82[ASN][1000 genomes]
rs9516158	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9523891	0.81[ASN][1000 genomes]
rs9523894	0.82[ASN][1000 genomes]
rs9523902	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9561252	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900911	chr13:93666118-93768862	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832682	chr13:93700861-93874801	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93717600-93719800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:93717800-93719000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:93717800-93719800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:93718000-93719400	Enhancers	Osteobl	bone
5	chr13:93718200-93719000	Enhancers	HSMM	muscle
6	chr13:93718400-93719000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:93718400-93719000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:93718400-93719000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:93718400-93719200	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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