Variant report

Variant	rs9516151
Chromosome Location	chr13:93690860-93690861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12427817	0.82[ASN][1000 genomes]
rs160135	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs160140	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs160141	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs160150	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs172590	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs191044	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082819	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840032	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs306684	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs462910	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs463719	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs466561	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5008536	0.84[ASN][1000 genomes]
rs61976291	0.92[ASN][1000 genomes]
rs7996591	0.83[ASN][1000 genomes]
rs9301847	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516149	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9516158	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9523891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523902	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900911	chr13:93666118-93768862	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93690600-93692600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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