Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:93707425-93707922	H1-neurons	neurons:	n/a	n/a
2	REST	chr13:93707407-93708021	H1-neurons	neurons:	n/a	n/a
3	REST	chr13:93707352-93708120	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr13:93707452-93707921	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
LINC00363	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12427817	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs160135	0.81[EUR][1000 genomes]
rs160140	0.81[EUR][1000 genomes]
rs160141	0.81[EUR][1000 genomes]
rs160150	0.84[EUR][1000 genomes]
rs172590	0.81[EUR][1000 genomes]
rs191044	0.84[EUR][1000 genomes]
rs2082818	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2082819	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2840032	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs306684	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs462910	0.81[EUR][1000 genomes]
rs463719	0.81[EUR][1000 genomes]
rs466561	0.81[EUR][1000 genomes]
rs5008536	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61976291	0.97[ASN][1000 genomes]
rs7996591	0.88[ASN][1000 genomes]
rs9301847	0.81[EUR][1000 genomes]
rs9516149	0.83[EUR][1000 genomes]
rs9516151	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9516154	0.92[CHB][hapmap]
rs9516155	0.81[CHB][hapmap]
rs9516158	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523891	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9523894	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9561252	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900911	chr13:93666118-93768862	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv519671	chr13:93700675-93713120	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv526346	chr13:93700675-93713120	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832682	chr13:93700861-93874801	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93707000-93708600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:93707400-93707800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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