Variant report
| Variant | rs2840032 |
|---|---|
| Chromosome Location | chr13:93692510-93692511 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11841342 | 0.80[AFR][1000 genomes] |
| rs12427817 | 0.82[ASN][1000 genomes] |
| rs160135 | 0.87[EUR][1000 genomes] |
| rs160140 | 0.87[EUR][1000 genomes] |
| rs160141 | 0.87[EUR][1000 genomes] |
| rs160150 | 0.90[EUR][1000 genomes] |
| rs172590 | 0.87[EUR][1000 genomes] |
| rs191044 | 0.90[EUR][1000 genomes] |
| rs2082818 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2082819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs306684 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs462910 | 0.87[EUR][1000 genomes] |
| rs463719 | 0.87[EUR][1000 genomes] |
| rs466561 | 0.87[EUR][1000 genomes] |
| rs5008536 | 0.84[ASN][1000 genomes] |
| rs61976291 | 0.92[ASN][1000 genomes] |
| rs7996591 | 0.83[ASN][1000 genomes] |
| rs9301847 | 0.87[EUR][1000 genomes] |
| rs9516149 | 0.88[EUR][1000 genomes] |
| rs9516151 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9516158 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9523891 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9523894 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9523902 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv900911 | chr13:93666118-93768862 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv983614 | chr13:93691500-93697268 | Active TSS ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93690600-93692600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
