Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12428277	1.00[EUR][1000 genomes]
rs12429232	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12429502	1.00[AFR][1000 genomes]
rs12430337	1.00[EUR][1000 genomes]
rs12431333	1.00[EUR][1000 genomes]
rs12583271	1.00[EUR][1000 genomes]
rs17077845	1.00[AFR][1000 genomes]
rs17077916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17077997	0.89[ASN][1000 genomes]
rs2094798	1.00[EUR][1000 genomes]
rs55817338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55965959	1.00[EUR][1000 genomes]
rs59190518	1.00[EUR][1000 genomes]
rs60413050	1.00[EUR][1000 genomes]
rs60711933	1.00[EUR][1000 genomes]
rs61300340	1.00[EUR][1000 genomes]
rs74101119	1.00[EUR][1000 genomes]
rs74101121	1.00[EUR][1000 genomes]
rs74101122	1.00[EUR][1000 genomes]
rs74102858	1.00[EUR][1000 genomes]
rs74102862	1.00[EUR][1000 genomes]
rs9593920	1.00[EUR][1000 genomes]
rs9602436	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv832664	chr13:84796715-84954393	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900688	chr13:84807007-84916858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv832665	chr13:84848087-85041311	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900689	chr13:84877516-84950046	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900690	chr13:84877516-85052477	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84893200-84895000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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