Variant report
| Variant | rs55817338 |
|---|---|
| Chromosome Location | chr13:84894518-84894519 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12428277 | 1.00[EUR][1000 genomes] |
| rs12429232 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12429502 | 1.00[AFR][1000 genomes] |
| rs12429944 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12430337 | 1.00[EUR][1000 genomes] |
| rs12431333 | 1.00[EUR][1000 genomes] |
| rs12583271 | 1.00[EUR][1000 genomes] |
| rs17077845 | 1.00[AFR][1000 genomes] |
| rs17077916 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17077997 | 0.89[ASN][1000 genomes] |
| rs2094798 | 1.00[EUR][1000 genomes] |
| rs55965959 | 1.00[EUR][1000 genomes] |
| rs59190518 | 1.00[EUR][1000 genomes] |
| rs60413050 | 1.00[EUR][1000 genomes] |
| rs60711933 | 1.00[EUR][1000 genomes] |
| rs61300340 | 1.00[EUR][1000 genomes] |
| rs74101119 | 1.00[EUR][1000 genomes] |
| rs74101121 | 1.00[EUR][1000 genomes] |
| rs74101122 | 1.00[EUR][1000 genomes] |
| rs74102858 | 1.00[EUR][1000 genomes] |
| rs74102862 | 1.00[EUR][1000 genomes] |
| rs9593920 | 1.00[EUR][1000 genomes] |
| rs9602436 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044494 | chr13:84705200-84897141 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv832664 | chr13:84796715-84954393 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv900688 | chr13:84807007-84916858 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv832665 | chr13:84848087-85041311 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv900689 | chr13:84877516-84950046 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv900690 | chr13:84877516-85052477 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:84893000-84894800 | Enhancers | Brain Germinal Matrix | brain |
| 2 | chr13:84893200-84895000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr13:84893600-84894600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
