Variant report

Variant	rs55965959
Chromosome Location	chr13:84927365-84927366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12427450	0.80[ASN][1000 genomes]
rs12427496	0.80[ASN][1000 genomes]
rs12427710	0.80[ASN][1000 genomes]
rs12428277	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12428484	0.80[ASN][1000 genomes]
rs12428485	0.80[ASN][1000 genomes]
rs12428516	0.80[ASN][1000 genomes]
rs12429232	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12429466	0.80[ASN][1000 genomes]
rs12429471	0.80[ASN][1000 genomes]
rs12429944	1.00[EUR][1000 genomes]
rs12430337	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12431304	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12431333	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12583271	1.00[EUR][1000 genomes]
rs17077916	1.00[EUR][1000 genomes]
rs17078129	0.80[ASN][1000 genomes]
rs17078133	0.80[ASN][1000 genomes]
rs17078136	0.80[ASN][1000 genomes]
rs17078138	0.80[ASN][1000 genomes]
rs17078142	0.80[ASN][1000 genomes]
rs2094798	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55817338	1.00[EUR][1000 genomes]
rs57755697	0.84[ASN][1000 genomes]
rs59190518	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60413050	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60711933	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61005943	0.80[ASN][1000 genomes]
rs61300340	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74101119	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74101121	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74101122	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74102857	0.88[AFR][1000 genomes]
rs74102858	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74102862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74102863	0.92[AFR][1000 genomes]
rs74102868	0.92[AFR][1000 genomes]
rs9593920	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9602436	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832664	chr13:84796715-84954393	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv832665	chr13:84848087-85041311	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900689	chr13:84877516-84950046	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900690	chr13:84877516-85052477	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv521458	chr13:84902560-84986073	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84926600-84927800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84927000-84927800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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