Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10483934	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11159413	0.93[JPT][hapmap]
rs12431745	0.87[ASN][1000 genomes]
rs12433156	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12897340	0.83[ASN][1000 genomes]
rs17764512	0.91[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17764680	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs17764734	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2215840	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35394430	0.83[ASN][1000 genomes]
rs36111008	0.81[ASN][1000 genomes]
rs4903872	0.95[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903875	0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs5014481	0.87[CEU][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs61990357	0.82[ASN][1000 genomes]
rs7142324	0.86[ASN][1000 genomes]
rs7148220	0.83[ASN][1000 genomes]
rs7148497	0.83[ASN][1000 genomes]
rs7158489	0.81[CHB][hapmap]
rs72698406	0.87[ASN][1000 genomes]
rs8004436	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8016886	0.85[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80196400-80200600	Weak transcription	Aorta	Aorta
3	chr14:80196800-80200600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:80197400-80199400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:80198000-80199200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:80198600-80198800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:80198600-80199000	Enhancers	NHLF	lung

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