Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10162466	0.83[CEU][hapmap]
rs10483934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11159413	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12431745	0.85[ASN][1000 genomes]
rs12433156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12434821	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12435036	0.85[CHB][hapmap]
rs12897340	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17174997	0.88[CEU][hapmap]
rs17764512	0.86[JPT][hapmap]
rs17764680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2049831	0.82[CEU][hapmap]
rs2215840	0.85[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2242641	0.81[CEU][hapmap]
rs2242642	0.82[CEU][hapmap]
rs2242644	0.82[CEU][hapmap]
rs2242645	0.81[CEU][hapmap]
rs2242646	0.82[CEU][hapmap]
rs2242649	0.82[CEU][hapmap]
rs2293822	0.83[CEU][hapmap]
rs2293830	0.83[CEU][hapmap]
rs35394430	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36111008	0.86[ASN][1000 genomes]
rs4903872	0.86[JPT][hapmap]
rs4903875	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs5014481	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7142324	0.89[ASN][1000 genomes]
rs72698406	0.90[ASN][1000 genomes]
rs8016886	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80261800-80263400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr14:80262200-80263200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:80262200-80263200	Enhancers	Brain Germinal Matrix	brain
4	chr14:80262600-80268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:80263000-80267200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:80263000-80268400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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