Variant report

Variant	rs17174997
Chromosome Location	chr14:80285388-80285389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013449	0.89[AFR][1000 genomes]
rs1013450	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10144662	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11159418	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1159038	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12431745	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12885142	0.89[AFR][1000 genomes]
rs17764512	0.88[MEX][hapmap]
rs17764734	0.88[CEU][hapmap]
rs1997565	0.89[AFR][1000 genomes]
rs1997566	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1997567	0.89[AFR][1000 genomes]
rs2178886	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2215840	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2223032	1.00[YRI][hapmap]
rs2223034	0.89[AFR][1000 genomes]
rs2242640	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2242641	0.91[ASW][hapmap];0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2293831	0.89[AFR][1000 genomes]
rs2371104	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4243665	0.88[AFR][1000 genomes]
rs4903872	0.82[CHD][hapmap];0.88[MEX][hapmap]
rs4903881	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4903882	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4903883	0.89[AFR][1000 genomes]
rs6574525	1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6574526	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6574527	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7156557	1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7157705	1.00[YRI][hapmap]
rs7157885	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs727105	0.89[AFR][1000 genomes]
rs727106	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs8003909	1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs8009908	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs8010821	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs8016178	0.89[AFR][1000 genomes]
rs8016336	0.89[AFR][1000 genomes]
rs8016886	0.87[MEX][hapmap]
rs8017057	1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8020458	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs932261	1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs932262	0.89[AFR][1000 genomes]
rs932263	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs932264	0.93[AFR][1000 genomes]
rs932265	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs959165	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80281000-80286600	Weak transcription	Brain Inferior Temporal Lobe	brain

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