Variant report
| Variant | rs2215840 |
|---|---|
| Chromosome Location | chr14:80270068-80270069 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs1013450 | 1.00[YRI][hapmap] |
| rs10144662 | 1.00[YRI][hapmap] |
| rs10483934 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11159413 | 0.93[JPT][hapmap] |
| rs11159418 | 1.00[YRI][hapmap] |
| rs1159038 | 1.00[YRI][hapmap] |
| rs12431745 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12433156 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
| rs12434821 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs12897340 | 0.88[ASN][1000 genomes] |
| rs17174997 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17764512 | 0.92[CHB][hapmap];0.93[JPT][hapmap] |
| rs17764680 | 0.85[CHB][hapmap];0.93[JPT][hapmap] |
| rs17764734 | 0.85[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1997566 | 1.00[YRI][hapmap] |
| rs2178886 | 1.00[YRI][hapmap] |
| rs2223032 | 1.00[YRI][hapmap] |
| rs2242640 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2242641 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2371104 | 1.00[YRI][hapmap] |
| rs35394430 | 0.88[ASN][1000 genomes] |
| rs36111008 | 0.81[ASN][1000 genomes] |
| rs4903872 | 0.92[CHB][hapmap];0.93[JPT][hapmap] |
| rs4903875 | 0.81[JPT][hapmap] |
| rs4903881 | 1.00[YRI][hapmap] |
| rs4903882 | 1.00[YRI][hapmap] |
| rs5014481 | 0.93[JPT][hapmap] |
| rs6574525 | 1.00[YRI][hapmap] |
| rs6574526 | 1.00[YRI][hapmap] |
| rs6574527 | 1.00[YRI][hapmap] |
| rs7142324 | 0.84[ASN][1000 genomes] |
| rs7156557 | 1.00[YRI][hapmap] |
| rs7157705 | 1.00[YRI][hapmap] |
| rs7157885 | 1.00[YRI][hapmap] |
| rs7158489 | 0.81[CHB][hapmap] |
| rs72698406 | 0.85[ASN][1000 genomes] |
| rs727106 | 1.00[YRI][hapmap] |
| rs8003909 | 1.00[YRI][hapmap] |
| rs8009908 | 0.91[YRI][hapmap] |
| rs8010821 | 1.00[YRI][hapmap] |
| rs8016886 | 0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs8017057 | 1.00[YRI][hapmap] |
| rs8020458 | 0.91[YRI][hapmap] |
| rs932261 | 1.00[YRI][hapmap] |
| rs932263 | 1.00[YRI][hapmap] |
| rs932265 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv902113 | chr14:80172094-80929699 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
