Variant report

Variant	rs4903872
Chromosome Location	chr14:80191418-80191419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483934	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs11159413	0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap]
rs12433104	0.80[CEU][hapmap]
rs12433156	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs12434821	0.95[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17174997	0.82[CHD][hapmap];0.88[MEX][hapmap]
rs17764512	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17764680	0.86[JPT][hapmap];0.88[MEX][hapmap]
rs17764734	0.86[JPT][hapmap]
rs2215840	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs2242641	0.82[CHD][hapmap];0.84[MEX][hapmap]
rs4903875	0.91[CEU][hapmap];0.88[MEX][hapmap]
rs5014481	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap]
rs8004436	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016886	0.86[JPT][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80178200-80196200	Weak transcription	Aorta	Aorta
3	chr14:80191000-80191600	Weak transcription	Fetal Lung	lung
4	chr14:80191000-80193000	Enhancers	Dnd41	blood
5	chr14:80191400-80191600	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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