Variant report

Variant	rs12435245
Chromosome Location	chr14:84464926-84464927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1031786	1.00[ASN][1000 genomes]
rs10484121	1.00[ASN][1000 genomes]
rs10484122	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498570	1.00[ASN][1000 genomes]
rs10498571	1.00[ASN][1000 genomes]
rs11159625	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11629380	0.82[AMR][1000 genomes]
rs12431590	0.87[AMR][1000 genomes]
rs12432517	1.00[ASN][1000 genomes]
rs12433100	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12434328	1.00[ASN][1000 genomes]
rs12434420	1.00[ASN][1000 genomes]
rs12434759	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12435187	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12436525	0.83[EUR][1000 genomes]
rs12882862	1.00[ASN][1000 genomes]
rs12885704	1.00[ASN][1000 genomes]
rs12887939	1.00[ASN][1000 genomes]
rs12897738	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1547466	0.84[AMR][1000 genomes]
rs17623851	1.00[ASN][1000 genomes]
rs17624978	1.00[ASN][1000 genomes]
rs17625091	1.00[ASN][1000 genomes]
rs17647821	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17654374	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17654422	1.00[ASN][1000 genomes]
rs17696913	1.00[ASN][1000 genomes]
rs17697055	1.00[ASN][1000 genomes]
rs17703593	1.00[ASN][1000 genomes]
rs17726697	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34091992	1.00[ASN][1000 genomes]
rs34339499	1.00[ASN][1000 genomes]
rs34354494	1.00[ASN][1000 genomes]
rs34708795	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34806504	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35881988	1.00[ASN][1000 genomes]
rs35941036	1.00[ASN][1000 genomes]
rs61985922	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985923	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61987170	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66752331	1.00[ASN][1000 genomes]
rs71418933	1.00[ASN][1000 genomes]
rs7145578	1.00[ASN][1000 genomes]
rs7146489	1.00[ASN][1000 genomes]
rs7150766	1.00[ASN][1000 genomes]
rs7157753	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8003423	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008493	1.00[ASN][1000 genomes]
rs8010059	1.00[ASN][1000 genomes]
rs8018323	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3376532	chr14:84463849-84466672	Weak transcription	n/a	n/a	inside rSNPs	n/a
3	nsv827014	chr14:84464468-84465654	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84462600-84465200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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