Variant report

Variant	rs12438811
Chromosome Location	chr15:35310612-35310613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10152963	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11631003	0.80[ASN][1000 genomes]
rs11856195	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1551650	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1973117	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4924441	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55800572	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59869756	0.81[ASN][1000 genomes]
rs66881732	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7171832	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7173632	0.84[AMR][1000 genomes]
rs72702741	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8038032	0.83[ASN][1000 genomes]
rs8042678	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35299400-35311400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:35306200-35311000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr15:35306200-35311400	Weak transcription	NHEK	skin
4	chr15:35306200-35320200	Weak transcription	HSMMtube	muscle
5	chr15:35306600-35311200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:35307800-35311200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:35307800-35311400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:35307800-35312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:35308000-35311200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:35308800-35311000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:35310200-35310800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:35310400-35311200	Active TSS	Placenta	Placenta
13	chr15:35310400-35311800	Active TSS	A549	lung
14	chr15:35310600-35310800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:35310600-35311000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:35310600-35311400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:35310600-35312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:35310600-35312200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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