Variant report

Variant	rs66881732
Chromosome Location	chr15:35285843-35285844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:35285794-35285851	K562	blood:	n/a	n/a
2	POLR2A	chr15:35285687-35285981	HCT-116	colon:	n/a	n/a
3	SP1	chr15:35285461-35286242	HCT-116	colon:	n/a	n/a
4	NFYB	chr15:35285509-35286529	GM12878	blood:	n/a	n/a
5	EP300	chr15:35285791-35286547	GM12878	blood:	n/a	n/a
6	BATF	chr15:35285711-35286573	GM12878	blood:	n/a	n/a
7	WRNIP1	chr15:35285589-35285857	GM12878	blood:	n/a	n/a
8	BATF	chr15:35285713-35285935	GM12878	blood:	n/a	n/a
9	JUND	chr15:35285701-35285982	K562	blood:	n/a	n/a
10	JUN	chr15:35285721-35285911	K562	blood:	n/a	n/a
11	CUX1	chr15:35285726-35286022	K562	blood:	n/a	n/a
12	MTA3	chr15:35285621-35286752	GM12878	blood:	n/a	n/a
13	ATF2	chr15:35285840-35286517	GM12878	blood:	n/a	n/a
14	SP1	chr15:35285469-35286302	HCT-116	colon:	n/a	n/a
15	FOSL1	chr15:35285507-35286086	HCT-116	colon:	n/a	n/a
16	ATF2	chr15:35285735-35286653	GM12878	blood:	n/a	n/a
17	CREB1	chr15:35285550-35286042	GM12878	blood:	n/a	n/a
18	PML	chr15:35285687-35286570	GM12878	blood:	n/a	n/a
19	RUNX3	chr15:35285625-35286632	GM12878	blood:	n/a	n/a
20	CUX1	chr15:35285751-35286512	GM12878	blood:	n/a	n/a
21	IRF4	chr15:35285706-35286559	GM12878	blood:	n/a	n/a
22	FOS	chr15:35285805-35285979	MCF10A-Er-Src	breast:	n/a	n/a
23	FOXM1	chr15:35285695-35286540	GM12878	blood:	n/a	n/a
24	FOSL1	chr15:35285512-35286141	HCT-116	colon:	n/a	n/a
25	POLR2A	chr15:35285660-35286013	HCT-116	colon:	n/a	n/a
26	RUNX3	chr15:35285610-35286702	GM12878	blood:	n/a	n/a
27	YY1	chr15:35285794-35286459	GM12878	blood:	n/a	n/a
28	IKZF1	chr15:35285663-35286570	GM12878	blood:	n/a	n/a
29	FOS	chr15:35285747-35285864	MCF10A-Er-Src	breast:	n/a	n/a
30	NFIC	chr15:35285575-35286590	GM12878	blood:	n/a	n/a
31	ARID3A	chr15:35285811-35285871	K562	blood:	n/a	n/a
32	JUND	chr15:35285547-35286153	HCT-116	colon:	n/a	n/a
33	JUND	chr15:35285583-35286124	HCT-116	colon:	n/a	n/a
34	FOS	chr15:35285721-35285979	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35278794..35283582-chr15:35283942..35288956,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259181	TF binding region
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10152963	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11856195	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12438811	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551650	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1973117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35230061	0.81[ASN][1000 genomes]
rs4486836	0.80[ASN][1000 genomes]
rs4924441	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55800572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164991	0.81[ASN][1000 genomes]
rs7171832	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7173632	0.84[AMR][1000 genomes]
rs72702741	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8042678	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35281000-35287600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35281200-35286200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:35281200-35289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:35281400-35286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:35281400-35286400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:35281400-35286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:35281400-35299000	Weak transcription	Right Atrium	heart
8	chr15:35281600-35286000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:35284000-35286400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:35284000-35286400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:35284000-35286800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:35284000-35287200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:35284000-35287200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:35285200-35287600	Enhancers	HMEC	breast
15	chr15:35285200-35287600	Enhancers	NHEK	skin
16	chr15:35285200-35287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:35285200-35287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:35285400-35286200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:35285400-35286200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:35285400-35286400	Enhancers	Hela-S3	cervix
21	chr15:35285400-35286800	Enhancers	K562	blood
22	chr15:35285600-35286000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:35285800-35286000	Flanking Active TSS	GM12878-XiMat	blood
24	chr15:35285800-35288200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:35285800-35288200	Enhancers	HUES6 Cell Line	embryonic stem cell

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