Variant report

Variant	rs7173632
Chromosome Location	chr15:35305618-35305619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10152963	0.84[AMR][1000 genomes]
rs11856195	0.83[AMR][1000 genomes]
rs12438811	0.84[AMR][1000 genomes]
rs1551650	0.85[AMR][1000 genomes]
rs1973117	0.84[AMR][1000 genomes]
rs4924441	0.84[AMR][1000 genomes]
rs55800572	0.84[AMR][1000 genomes]
rs66881732	0.84[AMR][1000 genomes]
rs7171832	0.80[AMR][1000 genomes]
rs72702741	0.83[AMR][1000 genomes]
rs8042678	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs7173632	NDOR1	cis	Liver	GTEx
rs7173632	RXFP4	trans	multi-tissue	Pritchard
rs7173632	CTNNA3	cis	Liver	GTEx
rs7173632	hCT1970630	trans	multi-tissue	Pritchard
rs7173632	ENST00000270119	trans	multi-tissue	Pritchard
rs7173632	NDOR1	trans	multi-tissue	Pritchard
rs7173632	HSS00225764	trans	multi-tissue	Pritchard
rs7173632	HSS00090357	trans	multi-tissue	Pritchard
rs7173632	hCT30026.3	cis	multi-tissue	Pritchard
rs7173632	EMR4P	cis	Liver	GTEx
rs7173632	XM_066454	trans	multi-tissue	Pritchard
rs7173632	PCBP3	cis	Liver	GTEx
rs7173632	EMR4	trans	multi-tissue	Pritchard
rs7173632	AL833559	trans	multi-tissue	Pritchard
rs7173632	FAM149B1	trans	parietal	SCAN
rs7173632	BC039350	trans	multi-tissue	Pritchard
rs7173632	KIAA0892	cis	Liver	GTEx
rs7173632	ZNF770	cis	multi-tissue	Pritchard
rs7173632	RXFP4	cis	Liver	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35299400-35311400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:35305400-35307800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:35305600-35306000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:35305600-35306200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:35305600-35306200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:35305600-35306200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr15:35305600-35306400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:35305600-35307800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:35305600-35308000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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