Variant report
| Variant | rs8042678 |
|---|---|
| Chromosome Location | chr15:35303064-35303065 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:35296271..35299803-chr15:35301130..35304541,3 | K562 | blood: |
(count:3 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AC114546.1-2 | chr15:35302946-35303383 | ENSG00000259587.1 |
| 2 | lnc-AC114546.1-2 | chr15:35302946-35303366 | NONHSAT041613 |
| 3 | lnc-AC114546.1-2 | chr15:35302946-35303392 | ENSG00000259587.2 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10152963 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11631003 | 0.96[ASN][1000 genomes] |
| rs11856195 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12438811 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1551650 | 0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1973117 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35230061 | 0.87[ASN][1000 genomes] |
| rs4486836 | 0.80[ASN][1000 genomes] |
| rs4924441 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55800572 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs59869756 | 0.93[ASN][1000 genomes] |
| rs66881732 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7164991 | 0.87[ASN][1000 genomes] |
| rs7171832 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7173632 | 0.89[AMR][1000 genomes] |
| rs72702741 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8038032 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3350109 | chr15:34668106-35534229 | Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 2 | nsv522411 | chr15:34953986-35462981 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:35299400-35311400 | Weak transcription | H9 Cell Line | embryonic stem cell |
