The 2.0 version of rSNPBase

Variant report

Variant rs12465512
Chromosome Location chr2:173489046-173489047
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173461400-173504200 Weak transcription NHEK skin
2 chr2:173462200-173507400 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr2:173463400-173489400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr2:173465600-173495200 Weak transcription Ovary ovary
5 chr2:173471800-173495600 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr2:173472600-173504600 Weak transcription Adipose Nuclei Adipose
7 chr2:173474400-173489800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr2:173474600-173504400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr2:173478800-173496800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr2:173479600-173489600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr2:173479600-173490200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr2:173479600-173495800 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr2:173479600-173496200 Weak transcription Thymus Thymus
14 chr2:173479800-173494600 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr2:173479800-173496000 Weak transcription Placenta Amnion Placenta Amnion
16 chr2:173480000-173492200 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr2:173480000-173493800 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr2:173480000-173494200 Weak transcription Primary T cells fromperipheralblood blood
19 chr2:173480000-173495000 Weak transcription Primary B cells from peripheral blood blood
20 chr2:173480000-173495200 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr2:173480000-173496000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr2:173480200-173495800 Weak transcription GM12878-XiMat blood
23 chr2:173480200-173499200 Weak transcription HepG2 liver
24 chr2:173485800-173497200 Weak transcription Brain Hippocampus Middle brain
25 chr2:173487800-173489200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr2:173487800-173489200 Enhancers NHDF-Ad bronchial
27 chr2:173487800-173490000 Strong transcription Dnd41 blood
28 chr2:173488000-173489200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr2:173488000-173489400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr2:173488000-173489400 Strong transcription Primary T cells from cord blood blood
31 chr2:173488000-173489400 Enhancers Duodenum Mucosa Duodenum
32 chr2:173488000-173490000 Enhancers Osteobl bone
33 chr2:173488000-173490200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
34 chr2:173488400-173489800 Weak transcription HSMMtube muscle
35 chr2:173488600-173489200 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
36 chr2:173488600-173489400 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
37 chr2:173488600-173489400 Strong transcription Primary B cells from cord blood blood
38 chr2:173488600-173490000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
39 chr2:173488800-173489200 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr2:173488800-173489200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
41 chr2:173488800-173489200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr2:173488800-173489200 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin02 Skin
43 chr2:173488800-173489200 ZNF genes & repeats Fetal Thymus thymus
44 chr2:173488800-173489400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr2:173488800-173489400 ZNF genes & repeats NHLF lung
46 chr2:173488800-173489600 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
47 chr2:173488800-173489800 ZNF genes & repeats Fetal Stomach stomach
48 chr2:173488800-173491800 Weak transcription Aorta Aorta
49 chr2:173488800-173494200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr2:173489000-173489200 ZNF genes & repeats iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015