Variant report

Variant	rs6733671
Chromosome Location	chr2:173559068-173559069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173558154..173560301-chr2:173561566..173564675,4	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1010752	0.84[ASN][1000 genomes]
rs10930561	0.80[CHB][hapmap]
rs10930566	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930567	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930568	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930569	0.82[ASN][1000 genomes]
rs12052531	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12464110	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12465512	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12465795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12617037	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12617921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12618078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12618132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12620518	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12621044	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13423020	0.81[ASN][1000 genomes]
rs1530864	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs1530865	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs1531148	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1531149	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16860693	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs16860781	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16860789	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16860834	1.00[AFR][1000 genomes]
rs2122833	0.93[EUR][1000 genomes]
rs28761282	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4395226	0.81[ASN][1000 genomes]
rs59578456	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59606385	1.00[AFR][1000 genomes]
rs60127617	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61121406	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61505737	0.80[ASN][1000 genomes]
rs6433376	0.82[ASN][1000 genomes]
rs6709144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718681	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6719140	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs70937083	0.80[ASN][1000 genomes]
rs70937084	0.80[ASN][1000 genomes]
rs836628	0.86[ASN][1000 genomes]
rs836643	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv274888	chr2:173550156-173559068	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173556800-173559400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:173556800-173564600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:173557200-173559200	Enhancers	Fetal Heart	heart
4	chr2:173557200-173559400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:173557200-173559400	Enhancers	NHDF-Ad	bronchial
6	chr2:173557200-173559400	Enhancers	NHLF	lung
7	chr2:173557400-173559400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:173557400-173559600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:173558400-173559400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:173558400-173559400	Enhancers	NHEK	skin
11	chr2:173558600-173559200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:173558600-173559200	Enhancers	A549	lung
13	chr2:173558600-173559400	Enhancers	Thymus	Thymus
14	chr2:173558800-173559200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:173558800-173560400	Weak transcription	Esophagus	oesophagus
16	chr2:173558800-173562200	Weak transcription	NH-A	brain
17	chr2:173558800-173562400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:173558800-173562400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:173558800-173562400	Weak transcription	HUVEC	blood vessel
20	chr2:173558800-173563000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:173559000-173559400	Enhancers	Primary T cells from cord blood	blood
22	chr2:173559000-173559400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr2:173559000-173560400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr2:173559000-173561800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:173559000-173561800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:173559000-173561800	Weak transcription	Hela-S3	cervix
27	chr2:173559000-173562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:173559000-173562000	Weak transcription	HMEC	breast
29	chr2:173559000-173562000	Weak transcription	HSMM	muscle
30	chr2:173559000-173562400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:173559000-173562600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:173559000-173562600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:173559000-173563000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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