Variant report

Variant	rs12471565
Chromosome Location	chr2:113569920-113569921
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:
2	chr2:113519926..113522367-chr2:113568857..113570808,2	K562	blood:
3	chr2:113569914..113572061-chr2:113574224..113576848,2	K562	blood:

Variant related genes	Relation type
ENSG00000169607	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10167914	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10496444	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10496445	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11676014	0.89[ASN][1000 genomes]
rs11687624	0.86[ASN][1000 genomes]
rs12478842	0.91[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12612788	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12711741	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13000462	0.86[EUR][1000 genomes]
rs13009294	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13015273	0.82[CHB][hapmap]
rs13016817	0.82[CHB][hapmap]
rs13027814	0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1533463	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1609682	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1969294	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071373	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071376	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35145107	0.85[EUR][1000 genomes]
rs3783512	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783513	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783521	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783525	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783526	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783533	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783539	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783543	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783546	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3783550	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4402765	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4848301	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4848302	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6542095	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7369378	0.86[ASN][1000 genomes]
rs74182856	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567619	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113566400-113572400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:113567400-113570000	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:113567400-113575800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:113568400-113572200	Enhancers	HUVEC	blood vessel
5	chr2:113568400-113573000	Enhancers	HepG2	liver
6	chr2:113568600-113571600	Enhancers	NHEK	skin
7	chr2:113568600-113575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113568600-113575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:113568800-113570200	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:113568800-113570400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:113568800-113570400	Enhancers	Hela-S3	cervix
12	chr2:113568800-113571000	Enhancers	Spleen	Spleen
13	chr2:113568800-113571000	Enhancers	NHLF	lung
14	chr2:113568800-113571800	Enhancers	Adipose Nuclei	Adipose
15	chr2:113568800-113572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:113568800-113572200	Enhancers	HMEC	breast
17	chr2:113568800-113572400	Enhancers	NH-A	brain
18	chr2:113568800-113572400	Enhancers	NHDF-Ad	bronchial
19	chr2:113569000-113570200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:113569000-113570200	Enhancers	Colonic Mucosa	Colon
21	chr2:113569000-113570400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:113569000-113570400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:113569000-113570400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr2:113569000-113570600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:113569000-113570600	Enhancers	Left Ventricle	heart
26	chr2:113569000-113570600	Enhancers	Lung	lung
27	chr2:113569000-113570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:113569000-113570800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:113569000-113570800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr2:113569000-113570800	Enhancers	Esophagus	oesophagus
31	chr2:113569000-113571000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:113569000-113571400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr2:113569000-113571800	Enhancers	Fetal Stomach	stomach
34	chr2:113569000-113572200	Enhancers	Fetal Muscle Leg	muscle
35	chr2:113569000-113572200	Enhancers	Placenta	Placenta
36	chr2:113569000-113572200	Enhancers	Osteobl	bone
37	chr2:113569000-113572400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:113569000-113572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:113569000-113576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:113569200-113570000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr2:113569200-113570000	Enhancers	Fetal Intestine Small	intestine
42	chr2:113569200-113570200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr2:113569200-113570200	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr2:113569200-113570200	Enhancers	Duodenum Mucosa	Duodenum
45	chr2:113569200-113570400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr2:113569200-113570400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr2:113569200-113570400	Enhancers	Colon Smooth Muscle	Colon
48	chr2:113569200-113570400	Enhancers	A549	lung
49	chr2:113569200-113570600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr2:113569200-113570600	Enhancers	Primary T cells fromperipheralblood	blood

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