Variant report

Variant	rs4402765
Chromosome Location	chr2:113568847-113568848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10167914	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496444	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10496445	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11676014	0.88[ASN][1000 genomes]
rs11687624	0.85[ASN][1000 genomes]
rs12471565	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12478842	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12612788	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12711741	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13000462	0.84[EUR][1000 genomes]
rs13009294	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13015273	0.82[CHB][hapmap]
rs13016817	0.82[CHB][hapmap]
rs13027814	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1533463	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1609682	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1969294	0.82[ASN][1000 genomes]
rs2071373	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2071376	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35145107	0.84[EUR][1000 genomes]
rs3783512	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783513	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783521	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783525	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783526	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783533	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783539	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783543	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783546	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783550	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4848301	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4848302	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542095	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7369378	0.85[ASN][1000 genomes]
rs74182856	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7567619	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113563400-113569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:113563600-113569000	Weak transcription	Esophagus	oesophagus
3	chr2:113563600-113569200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:113565600-113569000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:113566400-113572400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:113566600-113569200	Weak transcription	Small Intestine	intestine
7	chr2:113567200-113569400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:113567400-113569000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:113567400-113569000	Weak transcription	Pancreas	Pancrea
10	chr2:113567400-113569000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:113567400-113569200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:113567400-113569200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:113567400-113569400	Weak transcription	Liver	Liver
14	chr2:113567400-113570000	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:113567400-113575800	Weak transcription	Brain Substantia Nigra	brain
16	chr2:113567800-113569000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:113567800-113569000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:113568400-113572200	Enhancers	HUVEC	blood vessel
19	chr2:113568400-113573000	Enhancers	HepG2	liver
20	chr2:113568600-113571600	Enhancers	NHEK	skin
21	chr2:113568600-113575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:113568600-113575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr2:113568800-113569000	Enhancers	Fetal Lung	lung
24	chr2:113568800-113569000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr2:113568800-113569800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr2:113568800-113570200	Enhancers	Primary hematopoietic stem cells	blood
27	chr2:113568800-113570400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr2:113568800-113570400	Enhancers	Hela-S3	cervix
29	chr2:113568800-113571000	Enhancers	Spleen	Spleen
30	chr2:113568800-113571000	Enhancers	NHLF	lung
31	chr2:113568800-113571800	Enhancers	Adipose Nuclei	Adipose
32	chr2:113568800-113572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:113568800-113572200	Enhancers	HMEC	breast
34	chr2:113568800-113572400	Enhancers	NH-A	brain
35	chr2:113568800-113572400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links