The 2.0 version of rSNPBase

Variant report

Variant rs12486417
Chromosome Location chr3:179474657-179474658
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
3 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
4 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
9 chr3:179449400-179503400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr3:179450000-179478400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr3:179450000-179484200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr3:179450000-179487200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr3:179450400-179483200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr3:179450400-179491800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr3:179451800-179478800 Weak transcription Esophagus oesophagus
16 chr3:179452800-179475000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr3:179452800-179478600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr3:179452800-179483000 Weak transcription A549 lung
19 chr3:179453200-179507600 Weak transcription NHEK skin
20 chr3:179458200-179483200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr3:179458400-179483200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr3:179460400-179478800 Weak transcription Pancreas Pancrea
23 chr3:179460800-179478400 Weak transcription Fetal Intestine Large intestine
24 chr3:179460800-179478400 Weak transcription NHDF-Ad bronchial
25 chr3:179460800-179478600 Weak transcription Hela-S3 cervix
26 chr3:179460800-179478600 Weak transcription NH-A brain
27 chr3:179460800-179478800 Weak transcription Brain Substantia Nigra brain
28 chr3:179460800-179478800 Weak transcription Small Intestine intestine
29 chr3:179461000-179476000 Weak transcription Gastric stomach
30 chr3:179461000-179478400 Weak transcription Primary hematopoietic stem cells blood
31 chr3:179461000-179478400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr3:179461000-179478400 Weak transcription Duodenum Mucosa Duodenum
33 chr3:179461000-179478600 Weak transcription Brain Inferior Temporal Lobe brain
34 chr3:179461000-179483000 Weak transcription Brain Angular Gyrus brain
35 chr3:179461000-179487400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
36 chr3:179461000-179487800 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr3:179461200-179477800 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr3:179461200-179478400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr3:179461400-179476000 Weak transcription Fetal Thymus thymus
40 chr3:179461400-179478600 Weak transcription Primary T cells fromperipheralblood blood
41 chr3:179461600-179478600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr3:179462000-179484200 Weak transcription Muscle Satellite Cultured Cells --
43 chr3:179462400-179475400 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr3:179462800-179478400 Weak transcription H1 Cell Line embryonic stem cell
45 chr3:179463000-179478400 Weak transcription Lung lung
46 chr3:179463000-179478800 Weak transcription Fetal Intestine Small intestine
47 chr3:179463000-179479000 Weak transcription Thymus Thymus
48 chr3:179463000-179481800 Weak transcription Aorta Aorta
49 chr3:179463000-179491800 Weak transcription Spleen Spleen
50 chr3:179463000-179492200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015