Variant report

Variant	rs12107867
Chromosome Location	chr3:179499960-179499961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10937010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486162	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12486417	1.00[ASN][1000 genomes]
rs12490505	1.00[ASN][1000 genomes]
rs12496310	1.00[CHB][hapmap]
rs12496469	1.00[ASN][1000 genomes]
rs13061657	1.00[ASN][1000 genomes]
rs13064352	0.90[GIH][hapmap]
rs13092742	0.83[EUR][1000 genomes]
rs16848333	0.91[CEU][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];0.86[EUR][1000 genomes]
rs17195983	0.83[CEU][hapmap];0.90[GIH][hapmap];0.83[EUR][1000 genomes]
rs17195990	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs2098450	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284885	1.00[ASN][1000 genomes]
rs60548982	0.81[ASN][1000 genomes]
rs759596	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610873	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7624986	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9814513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871083	1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:179453200-179507600	Weak transcription	NHEK	skin
5	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
7	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
8	chr3:179476200-179512200	Weak transcription	Gastric	stomach
9	chr3:179479000-179502600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
11	chr3:179479200-179500800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:179484600-179500000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:179485000-179502000	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:179485000-179505000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
19	chr3:179485200-179500200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:179485400-179505400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:179485600-179503400	Weak transcription	Right Ventricle	heart
25	chr3:179485800-179505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:179486200-179500000	Weak transcription	Brain Angular Gyrus	brain
27	chr3:179486400-179504400	Weak transcription	HSMMtube	muscle
28	chr3:179486400-179508800	Weak transcription	A549	lung
29	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
30	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
31	chr3:179488200-179502000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:179488800-179504000	Strong transcription	Dnd41	blood
33	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:179489600-179506200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
36	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
37	chr3:179492400-179518800	Weak transcription	Osteobl	bone
38	chr3:179493000-179503400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:179493800-179500200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:179493800-179500200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:179493800-179501400	Weak transcription	Ovary	ovary
42	chr3:179493800-179502000	Weak transcription	NHLF	lung
43	chr3:179493800-179502200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:179493800-179505600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:179493800-179505600	Weak transcription	Fetal Intestine Small	intestine
46	chr3:179493800-179507200	Weak transcription	Esophagus	oesophagus
47	chr3:179493800-179508600	Weak transcription	Fetal Intestine Large	intestine
48	chr3:179493800-179512000	Weak transcription	Pancreas	Pancrea
49	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:179494200-179503400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links