Variant report

Variant	rs10937010
Chromosome Location	chr3:179506482-179506483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12107867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12486417	1.00[ASN][1000 genomes]
rs12490505	1.00[ASN][1000 genomes]
rs12496310	1.00[CHB][hapmap]
rs12496469	1.00[ASN][1000 genomes]
rs13061657	1.00[ASN][1000 genomes]
rs13092742	0.83[EUR][1000 genomes]
rs16848333	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs17195983	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs17195990	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2098450	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284885	1.00[ASN][1000 genomes]
rs60548982	0.81[ASN][1000 genomes]
rs759596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7624986	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs9814513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871083	1.00[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179453200-179507600	Weak transcription	NHEK	skin
2	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
3	chr3:179476200-179512200	Weak transcription	Gastric	stomach
4	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:179486400-179508800	Weak transcription	A549	lung
10	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
11	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
12	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
14	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
15	chr3:179492400-179518800	Weak transcription	Osteobl	bone
16	chr3:179493800-179507200	Weak transcription	Esophagus	oesophagus
17	chr3:179493800-179508600	Weak transcription	Fetal Intestine Large	intestine
18	chr3:179493800-179512000	Weak transcription	Pancreas	Pancrea
19	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:179494200-179506800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:179494200-179517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:179494400-179506600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:179494400-179507000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:179494600-179509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:179494600-179510200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:179495200-179512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:179496000-179507800	Strong transcription	Adipose Nuclei	Adipose
28	chr3:179497600-179507600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:179498000-179506800	Weak transcription	Fetal Thymus	thymus
30	chr3:179498400-179528800	Weak transcription	Fetal Brain Male	brain
31	chr3:179500000-179507400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:179500000-179509200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:179500000-179514400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:179500000-179524800	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:179500400-179525200	Weak transcription	Brain Angular Gyrus	brain
36	chr3:179500600-179508200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:179500600-179508400	Weak transcription	Lung	lung
38	chr3:179500600-179513800	Weak transcription	Thymus	Thymus
39	chr3:179500600-179519000	Weak transcription	HSMM	muscle
40	chr3:179501200-179507400	Weak transcription	Fetal Stomach	stomach
41	chr3:179501800-179509200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:179502000-179506600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:179502000-179518400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:179502200-179507600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:179502200-179508600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:179502400-179507000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:179502400-179507600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:179502400-179508400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:179502800-179509200	Weak transcription	Fetal Lung	lung
50	chr3:179503200-179509200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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