Variant report

Variant	rs17195990
Chromosome Location	chr3:179502736-179502737
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10937010	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs12107867	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs13084462	0.94[AFR][1000 genomes]
rs13092742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16848333	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs17195969	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17195983	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34225521	1.00[AFR][1000 genomes]
rs35237953	1.00[AFR][1000 genomes]
rs35519266	1.00[AFR][1000 genomes]
rs62291561	1.00[AFR][1000 genomes]
rs6767490	0.88[YRI][hapmap]
rs759596	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs7624986	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs9814513	0.84[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:179453200-179507600	Weak transcription	NHEK	skin
4	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
6	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
7	chr3:179476200-179512200	Weak transcription	Gastric	stomach
8	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
9	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:179485000-179505000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
14	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:179485400-179505400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:179485600-179503400	Weak transcription	Right Ventricle	heart
19	chr3:179485800-179505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:179486400-179504400	Weak transcription	HSMMtube	muscle
21	chr3:179486400-179508800	Weak transcription	A549	lung
22	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
23	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
24	chr3:179488800-179504000	Strong transcription	Dnd41	blood
25	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:179489600-179506200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
28	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
29	chr3:179492400-179518800	Weak transcription	Osteobl	bone
30	chr3:179493000-179503400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:179493800-179505600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:179493800-179505600	Weak transcription	Fetal Intestine Small	intestine
33	chr3:179493800-179507200	Weak transcription	Esophagus	oesophagus
34	chr3:179493800-179508600	Weak transcription	Fetal Intestine Large	intestine
35	chr3:179493800-179512000	Weak transcription	Pancreas	Pancrea
36	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:179494200-179503400	Weak transcription	Placenta	Placenta
38	chr3:179494200-179506800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr3:179494200-179517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:179494400-179505200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:179494400-179506600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:179494400-179507000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:179494600-179509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:179494600-179510200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr3:179495200-179512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:179495400-179505800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:179496000-179507800	Strong transcription	Adipose Nuclei	Adipose
48	chr3:179496600-179503200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:179497200-179504000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:179497200-179505800	Strong transcription	Fetal Muscle Trunk	muscle

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