Variant report

Variant	rs17195969
Chromosome Location	chr3:179495617-179495618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13061657	0.81[EUR][1000 genomes]
rs13084462	0.94[AFR][1000 genomes]
rs13092742	0.97[AFR][1000 genomes]
rs13327135	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17195983	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17195990	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs34225521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35237953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35519266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62291561	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763414	0.95[EUR][1000 genomes]
rs6767490	0.88[YRI][hapmap]
rs9833194	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9871083	0.81[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:179437400-179501800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:179449400-179503400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:179453200-179507600	Weak transcription	NHEK	skin
5	chr3:179467600-179503200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
7	chr3:179475200-179503200	Weak transcription	Fetal Kidney	kidney
8	chr3:179476200-179512200	Weak transcription	Gastric	stomach
9	chr3:179479000-179502600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
11	chr3:179479200-179499400	Weak transcription	Thymus	Thymus
12	chr3:179479200-179500800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:179484600-179500000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:179484800-179497800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:179485000-179497200	Weak transcription	Fetal Brain Male	brain
18	chr3:179485000-179497800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:179485000-179498000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:179485000-179502000	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr3:179485000-179505000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
24	chr3:179485200-179499200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:179485200-179500200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:179485400-179505400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:179485600-179503400	Weak transcription	Right Ventricle	heart
31	chr3:179485800-179505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:179486200-179499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:179486200-179500000	Weak transcription	Brain Angular Gyrus	brain
34	chr3:179486400-179499400	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:179486400-179499400	Weak transcription	NH-A	brain
36	chr3:179486400-179504400	Weak transcription	HSMMtube	muscle
37	chr3:179486400-179508800	Weak transcription	A549	lung
38	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
39	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
40	chr3:179486600-179497200	Weak transcription	Primary B cells from cord blood	blood
41	chr3:179486800-179499400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:179488200-179502000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr3:179488800-179504000	Strong transcription	Dnd41	blood
44	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:179489600-179499800	Weak transcription	Stomach Mucosa	stomach
46	chr3:179489600-179506200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
48	chr3:179489800-179499600	Weak transcription	HSMM	muscle
49	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
50	chr3:179490400-179497200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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