Variant report

Variant	rs13092742
Chromosome Location	chr3:179512064-179512065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10937010	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12107867	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs13084462	0.91[AFR][1000 genomes]
rs16848333	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs17195969	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17195983	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17195990	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34225521	0.97[AFR][1000 genomes]
rs35237953	0.97[AFR][1000 genomes]
rs35519266	0.97[AFR][1000 genomes]
rs62291561	0.97[AFR][1000 genomes]
rs6767490	0.88[YRI][hapmap]
rs759596	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7624986	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs9814513	0.84[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179476200-179512200	Weak transcription	Gastric	stomach
2	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
7	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
8	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
9	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
10	chr3:179492400-179518800	Weak transcription	Osteobl	bone
11	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:179494200-179517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:179495200-179512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:179498400-179528800	Weak transcription	Fetal Brain Male	brain
15	chr3:179500000-179514400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:179500000-179524800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:179500400-179525200	Weak transcription	Brain Angular Gyrus	brain
18	chr3:179500600-179513800	Weak transcription	Thymus	Thymus
19	chr3:179500600-179519000	Weak transcription	HSMM	muscle
20	chr3:179502000-179518400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:179503200-179518600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:179503800-179514400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:179503800-179518600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:179504000-179514400	Weak transcription	HepG2	liver
25	chr3:179504000-179517400	Weak transcription	Dnd41	blood
26	chr3:179504000-179518200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:179504000-179518800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:179504000-179534800	Weak transcription	Fetal Brain Female	brain
29	chr3:179504000-179537400	Weak transcription	Brain Germinal Matrix	brain
30	chr3:179507000-179513800	Weak transcription	Fetal Thymus	thymus
31	chr3:179507000-179517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:179507600-179517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:179508000-179512200	Weak transcription	Left Ventricle	heart
34	chr3:179508000-179514600	Weak transcription	Fetal Stomach	stomach
35	chr3:179508000-179518400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:179508200-179519600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr3:179511000-179512200	Weak transcription	Psoas Muscle	Psoas
38	chr3:179511600-179512600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr3:179511600-179512600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr3:179512000-179512400	Enhancers	Pancreas	Pancrea
41	chr3:179512000-179512400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr3:179512000-179515200	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links