Variant report

Variant	rs9814513
Chromosome Location	chr3:179504309-179504310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179495986..179498863-chr3:179502747..179504649,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10937010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12486417	1.00[ASN][1000 genomes]
rs12490505	1.00[ASN][1000 genomes]
rs12496310	1.00[CHB][hapmap]
rs12496469	1.00[ASN][1000 genomes]
rs13061657	1.00[ASN][1000 genomes]
rs13092742	0.83[EUR][1000 genomes]
rs16848333	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs17195983	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs17195990	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2098450	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284885	1.00[ASN][1000 genomes]
rs60548982	0.81[ASN][1000 genomes]
rs759596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7610873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7624986	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs9871083	1.00[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179453200-179507600	Weak transcription	NHEK	skin
2	chr3:179472800-179510200	Weak transcription	Psoas Muscle	Psoas
3	chr3:179476200-179512200	Weak transcription	Gastric	stomach
4	chr3:179479000-179506200	Weak transcription	Small Intestine	intestine
5	chr3:179484600-179504400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:179484600-179518600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:179485000-179504600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:179485000-179505000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:179485000-179525200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:179485200-179517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:179485200-179521200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:179485400-179505400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:179485400-179508800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:179485800-179505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:179486400-179504400	Weak transcription	HSMMtube	muscle
16	chr3:179486400-179508800	Weak transcription	A549	lung
17	chr3:179486400-179518600	Weak transcription	NHDF-Ad	bronchial
18	chr3:179486400-179519600	Weak transcription	Hela-S3	cervix
19	chr3:179488800-179510800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:179489600-179506200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:179489600-179518800	Weak transcription	Brain Substantia Nigra	brain
22	chr3:179490200-179512200	Weak transcription	Fetal Heart	heart
23	chr3:179492400-179518800	Weak transcription	Osteobl	bone
24	chr3:179493800-179505600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:179493800-179505600	Weak transcription	Fetal Intestine Small	intestine
26	chr3:179493800-179507200	Weak transcription	Esophagus	oesophagus
27	chr3:179493800-179508600	Weak transcription	Fetal Intestine Large	intestine
28	chr3:179493800-179512000	Weak transcription	Pancreas	Pancrea
29	chr3:179493800-179528200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:179494200-179506800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:179494200-179517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:179494400-179505200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:179494400-179506600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:179494400-179507000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:179494600-179509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr3:179494600-179510200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:179495200-179512200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr3:179495400-179505800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:179496000-179507800	Strong transcription	Adipose Nuclei	Adipose
40	chr3:179497200-179505800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr3:179497600-179507600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:179497800-179504400	Strong transcription	Primary B cells from cord blood	blood
43	chr3:179498000-179506800	Weak transcription	Fetal Thymus	thymus
44	chr3:179498200-179505600	Strong transcription	Liver	Liver
45	chr3:179498400-179528800	Weak transcription	Fetal Brain Male	brain
46	chr3:179498600-179506200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:179499800-179505200	Weak transcription	NH-A	brain
48	chr3:179500000-179505000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:179500000-179505000	Weak transcription	HUVEC	blood vessel
50	chr3:179500000-179505800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links