Variant report

Variant rs12492566
Chromosome Location chr3:240228-240229
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:237000-240400 Active TSS Ovary ovary
2 chr3:237200-241000 Active TSS Brain Angular Gyrus brain
3 chr3:237200-241000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
4 chr3:237200-241000 Active TSS Fetal Brain Male brain
5 chr3:237400-241200 Active TSS Brain Inferior Temporal Lobe brain
6 chr3:237600-241200 Bivalent/Poised TSS Brain Cingulate Gyrus brain
7 chr3:237800-240400 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
8 chr3:237800-240400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
9 chr3:237800-240400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
10 chr3:237800-240400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
11 chr3:237800-240400 Flanking Active TSS Adipose Nuclei Adipose
12 chr3:237800-240400 Active TSS Pancreatic Islets Pancreatic Islet
13 chr3:237800-240400 Active TSS Rectal Mucosa Donor 29 rectum
14 chr3:237800-240400 Active TSS Right Atrium heart
15 chr3:237800-240600 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
16 chr3:238000-240400 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
17 chr3:238000-240400 Bivalent/Poised TSS H9 Derived Neuron Cultured Cells ES cell derived
18 chr3:238000-240400 Bivalent/Poised TSS IMR90 fetal lung fibroblasts Cell Line lung
19 chr3:238000-240400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
20 chr3:238000-240400 Active TSS Breast Myoepithelial Primary Cells Breast
21 chr3:238000-240400 Flanking Bivalent TSS/Enh Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr3:238200-240400 Active TSS ES-UCSF4 Cell Line embryonic stem cell
23 chr3:238200-240400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr3:238200-240400 Bivalent/Poised TSS Brain Substantia Nigra brain
25 chr3:238200-240400 Bivalent/Poised TSS Colon Smooth Muscle Colon
26 chr3:238200-240400 Bivalent/Poised TSS A549 lung
27 chr3:238400-240400 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
28 chr3:238400-240400 Active TSS H9 Cell Line embryonic stem cell
29 chr3:239200-243200 Active TSS Fetal Brain Female brain
30 chr3:239400-240800 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr3:239600-240400 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr3:239600-240400 Bivalent/Poised TSS Brain Hippocampus Middle brain
33 chr3:239800-240400 Bivalent Enhancer Primary B cells from cord blood blood
34 chr3:240000-240400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
35 chr3:240000-240400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
36 chr3:240000-240400 Flanking Active TSS Brain Germinal Matrix brain
37 chr3:240200-240400 Flanking Bivalent TSS/Enh iPS-18 Cell Line embryonic stem cell
38 chr3:240200-240400 Bivalent/Poised TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr3:240200-240400 Bivalent Enhancer Primary B cells from peripheral blood blood
40 chr3:240200-240400 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr3:240200-240400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
42 chr3:240200-240400 Flanking Active TSS Brain Anterior Caudate brain
43 chr3:240200-240400 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
44 chr3:240200-240400 Flanking Bivalent TSS/Enh Fetal Kidney kidney
45 chr3:240200-240400 Flanking Active TSS Rectal Smooth Muscle rectum
46 chr3:240200-240400 Bivalent Enhancer NH-A brain
47 chr3:240200-240600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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