Variant report

Variant	rs12495431
Chromosome Location	chr3:178597521-178597522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13066302	1.00[CHB][hapmap]
rs13079349	1.00[CHB][hapmap]
rs13100117	1.00[CHB][hapmap]
rs4955793	0.85[MKK][hapmap]
rs61796579	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796625	0.84[AFR][1000 genomes]
rs6804849	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807583	1.00[CHB][hapmap]
rs7372297	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854435	0.94[EUR][1000 genomes]
rs9872496	0.94[EUR][1000 genomes]
rs9882743	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12495431	KL	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178594000-178597800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:178594000-178597800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:178594200-178597600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:178597200-178598000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:178597400-178597800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:178597400-178599000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:178597400-178599000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:178597400-178599000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:178597400-178599200	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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