Variant report

Variant	rs12511688
Chromosome Location	chr4:173242945-173242946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11132935	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502211	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12509779	0.80[JPT][hapmap]
rs13101363	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs13434538	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1484019	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1552247	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs167991	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17288825	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17288971	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs17289279	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2626608	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2930204	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4692917	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6553625	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs768425	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs975588	0.80[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173241200-173244000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:173242800-173243200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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