Variant report

Variant	rs1552247
Chromosome Location	chr4:173232271-173232272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173230509..173232431-chr4:173232686..173235626,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11132935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11933109	1.00[YRI][hapmap]
rs12502211	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12509779	0.86[JPT][hapmap]
rs12511688	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13101363	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13434538	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1484019	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs167991	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs17288825	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17288971	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17289279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2332481	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2626608	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2930204	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4692917	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs6553625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6850602	1.00[YRI][hapmap]
rs768425	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs975588	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1025193	chr4:173145426-173267314	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv537360	chr4:173145426-173267314	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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