Variant report
| Variant | rs6553625 |
|---|---|
| Chromosome Location | chr4:173248444-173248445 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11132935 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs11726268 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12502211 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs12509779 | 0.86[JPT][hapmap] |
| rs12511688 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs13101363 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs13117314 | 0.90[YRI][hapmap] |
| rs13434538 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1484019 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs1552247 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs167991 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17288825 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs17288971 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs17289279 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
| rs2332481 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2626608 | 0.90[CHB][hapmap];0.91[JPT][hapmap] |
| rs2930204 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
| rs333398 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs333399 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs333408 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4692917 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6830961 | 1.00[YRI][hapmap] |
| rs6836161 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs768425 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs975588 | 0.91[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031592 | chr4:173112542-173662991 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv537359 | chr4:173112542-173662991 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534293 | chr4:173121379-173606082 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025193 | chr4:173145426-173267314 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv537360 | chr4:173145426-173267314 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
