Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173322899..173324739-chr4:173326570..173328432,2	MCF-7	breast:
2	chr4:173322239..173324378-chr4:173327448..173329315,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11132935	0.95[JPT][hapmap]
rs1160452	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs11726268	0.90[ASN][1000 genomes]
rs12502211	0.95[JPT][hapmap]
rs12509779	0.95[JPT][hapmap]
rs12511688	0.80[CEU][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes]
rs13101363	0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs13434538	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1484019	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs1496711	0.81[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap]
rs1552247	0.90[JPT][hapmap]
rs167991	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17288825	0.95[JPT][hapmap]
rs17288971	0.95[JPT][hapmap]
rs17289279	0.90[JPT][hapmap]
rs17305821	1.00[LWK][hapmap]
rs2047341	0.81[CEU][hapmap];1.00[LWK][hapmap]
rs2332481	0.84[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2626608	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs2930204	0.91[JPT][hapmap]
rs333398	0.91[ASN][1000 genomes]
rs333399	0.91[ASN][1000 genomes]
rs333408	0.90[ASN][1000 genomes]
rs34069532	0.95[ASN][1000 genomes]
rs4140	1.00[LWK][hapmap]
rs4692917	0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6553625	0.91[JPT][hapmap]
rs6834066	0.89[CEU][hapmap]
rs6836161	0.93[ASN][1000 genomes]
rs768425	0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031327	chr4:173306405-173465248	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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