Variant report

Variant	rs12517746
Chromosome Location	chr5:60912151-60912152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4699977	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699978	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56257445	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs696891	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60895600-60912800	Weak transcription	Gastric	stomach
2	chr5:60906600-60921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:60906800-60921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:60909000-60912800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:60910600-60914400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:60910800-60913000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:60910800-60916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:60911000-60912400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:60911000-60912800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:60911000-60913000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:60911000-60913400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:60911000-60915400	Weak transcription	Adipose Nuclei	Adipose
13	chr5:60911200-60916400	Weak transcription	Brain Germinal Matrix	brain
14	chr5:60911400-60913000	Weak transcription	A549	lung
15	chr5:60911400-60914000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:60911400-60915200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:60911800-60912800	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:60911800-60915400	Weak transcription	Spleen	Spleen
19	chr5:60912000-60912600	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links