Variant report

Variant	rs4699978
Chromosome Location	chr5:60915216-60915217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60900962..60903313-chr5:60913201..60915983,2	K562	blood:
2	chr5:60627302..60631101-chr5:60914543..60920771,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130449	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12517746	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4699977	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56257445	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs696891	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60906600-60921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60906800-60921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:60910800-60916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:60911000-60915400	Weak transcription	Adipose Nuclei	Adipose
5	chr5:60911200-60916400	Weak transcription	Brain Germinal Matrix	brain
6	chr5:60911800-60915400	Weak transcription	Spleen	Spleen
7	chr5:60912400-60920800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr5:60912600-60920600	Enhancers	Brain Substantia Nigra	brain
9	chr5:60912800-60916400	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:60912800-60920800	Enhancers	Brain Hippocampus Middle	brain
11	chr5:60913000-60920800	Enhancers	Brain Anterior Caudate	brain
12	chr5:60913200-60916400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:60913200-60917000	Weak transcription	Gastric	stomach
14	chr5:60913400-60915600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:60913400-60919800	Enhancers	Brain Angular Gyrus	brain
16	chr5:60913800-60916600	Enhancers	A549	lung
17	chr5:60914000-60915600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:60914000-60917000	Enhancers	Primary B cells from peripheral blood	blood
19	chr5:60914200-60921400	Weak transcription	Aorta	Aorta
20	chr5:60914400-60916000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:60914400-60916800	Enhancers	Primary B cells from cord blood	blood
22	chr5:60914800-60917200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr5:60915000-60915400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:60915000-60915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:60915200-60915600	Enhancers	Stomach Smooth Muscle	stomach
26	chr5:60915200-60915800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:60915200-60916200	Enhancers	Fetal Muscle Leg	muscle
28	chr5:60915200-60916200	Enhancers	Right Atrium	heart
29	chr5:60915200-60916400	Enhancers	Lung	lung
30	chr5:60915200-60917600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr5:60915200-60917600	Enhancers	Ovary	ovary
32	chr5:60915200-60918600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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