Variant report

Variant	rs4699977
Chromosome Location	chr5:60910078-60910079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12517746	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36088	0.89[ASW][hapmap]
rs4699978	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56257445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60895600-60912800	Weak transcription	Gastric	stomach
2	chr5:60898800-60910800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:60906600-60921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:60906800-60911400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:60906800-60921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:60907000-60910800	Enhancers	Brain Anterior Caudate	brain
7	chr5:60907400-60912000	Enhancers	Brain Substantia Nigra	brain
8	chr5:60908000-60911000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr5:60908200-60911200	Enhancers	Brain Hippocampus Middle	brain
10	chr5:60908400-60911000	Enhancers	Brain Angular Gyrus	brain
11	chr5:60909000-60912800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:60909200-60911000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:60909400-60911000	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:60909800-60910400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:60909800-60910800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:60909800-60911000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:60909800-60911000	Weak transcription	Brain Germinal Matrix	brain
18	chr5:60910000-60911000	Enhancers	Adipose Nuclei	Adipose
19	chr5:60910000-60911400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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