Variant report

Variant	rs696891
Chromosome Location	chr5:60904561-60904562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12517746	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36088	0.89[ASW][hapmap]
rs4699977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699978	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56257445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60895600-60912800	Weak transcription	Gastric	stomach
2	chr5:60898800-60910800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:60900600-60905600	Weak transcription	Fetal Kidney	kidney
4	chr5:60900800-60905600	Weak transcription	A549	lung
5	chr5:60901200-60905400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:60901400-60905600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:60901400-60906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:60901600-60904600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:60901600-60904800	Weak transcription	Brain Substantia Nigra	brain
10	chr5:60901600-60905000	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:60901600-60905200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:60901600-60905600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:60901600-60905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:60901800-60904800	Weak transcription	Brain Anterior Caudate	brain
15	chr5:60901800-60905600	Weak transcription	Brain Angular Gyrus	brain
16	chr5:60903200-60909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:60903400-60905600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:60903400-60906400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:60904000-60905400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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