Variant report

Variant	rs12526221
Chromosome Location	chr6:15163985-15163986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15163487..15166298-chr6:15243296..15245626,2	K562	blood:
2	chr6:15088400..15090087-chr6:15163313..15165658,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11968994	1.00[ASN][1000 genomes]
rs12524357	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524540	1.00[ASN][1000 genomes]
rs12527270	1.00[ASN][1000 genomes]
rs12527312	1.00[ASN][1000 genomes]
rs12528518	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529010	1.00[ASN][1000 genomes]
rs12529719	1.00[ASN][1000 genomes]
rs12530015	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530231	1.00[ASN][1000 genomes]
rs13193188	1.00[ASN][1000 genomes]
rs13193311	1.00[ASN][1000 genomes]
rs13204596	1.00[ASN][1000 genomes]
rs13213362	1.00[ASN][1000 genomes]
rs13220124	1.00[ASN][1000 genomes]
rs16876112	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460493	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34766885	1.00[ASN][1000 genomes]
rs35003605	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57013338	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59109859	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61136001	1.00[ASN][1000 genomes]
rs61271709	1.00[ASN][1000 genomes]
rs6904999	1.00[ASN][1000 genomes]
rs6926190	1.00[ASN][1000 genomes]
rs73357717	1.00[ASN][1000 genomes]
rs73357719	1.00[ASN][1000 genomes]
rs73357720	1.00[ASN][1000 genomes]
rs73357732	1.00[ASN][1000 genomes]
rs73359689	1.00[ASN][1000 genomes]
rs73371691	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373454	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375522	1.00[ASN][1000 genomes]
rs73375538	1.00[ASN][1000 genomes]
rs7746089	1.00[ASN][1000 genomes]
rs9464756	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464758	1.00[ASN][1000 genomes]
rs9464759	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464760	1.00[ASN][1000 genomes]
rs9464772	1.00[ASN][1000 genomes]
rs9464775	1.00[ASN][1000 genomes]
rs9476767	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476773	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476774	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476777	1.00[ASN][1000 genomes]
rs9476778	1.00[ASN][1000 genomes]
rs9476802	1.00[ASN][1000 genomes]
rs9718146	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15161800-15166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15162200-15166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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