Variant report

Variant	rs73359689
Chromosome Location	chr6:15254908-15254909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15253847..15256230-chr6:15382765..15385020,2	MCF-7	breast:
2	chr6:14888308..14890393-chr6:15254270..15256315,2	MCF-7	breast:
3	chr6:15254326..15257195-chr6:15265565..15267643,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11968994	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524357	1.00[ASN][1000 genomes]
rs12524540	1.00[ASN][1000 genomes]
rs12525768	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12526221	1.00[ASN][1000 genomes]
rs12527270	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527312	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528518	1.00[ASN][1000 genomes]
rs12529010	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529719	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530015	1.00[ASN][1000 genomes]
rs12530231	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193188	1.00[ASN][1000 genomes]
rs13193311	1.00[ASN][1000 genomes]
rs13204596	1.00[ASN][1000 genomes]
rs13213362	1.00[ASN][1000 genomes]
rs13220124	1.00[ASN][1000 genomes]
rs16876112	1.00[ASN][1000 genomes]
rs17576261	1.00[ASN][1000 genomes]
rs28460493	1.00[ASN][1000 genomes]
rs34326651	1.00[ASN][1000 genomes]
rs34766885	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35003605	1.00[ASN][1000 genomes]
rs57013338	1.00[ASN][1000 genomes]
rs59109859	1.00[ASN][1000 genomes]
rs61136001	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61271709	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904999	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926190	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357717	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357719	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357720	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357732	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73371691	1.00[ASN][1000 genomes]
rs73373454	1.00[ASN][1000 genomes]
rs73375522	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375538	1.00[ASN][1000 genomes]
rs7746089	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464756	1.00[ASN][1000 genomes]
rs9464758	1.00[ASN][1000 genomes]
rs9464759	1.00[ASN][1000 genomes]
rs9464760	1.00[ASN][1000 genomes]
rs9464772	1.00[ASN][1000 genomes]
rs9464775	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476767	1.00[ASN][1000 genomes]
rs9476773	1.00[ASN][1000 genomes]
rs9476774	1.00[ASN][1000 genomes]
rs9476777	1.00[ASN][1000 genomes]
rs9476778	1.00[ASN][1000 genomes]
rs9476802	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476804	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9718146	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15249600-15256200	Weak transcription	Lung	lung
2	chr6:15249800-15256200	Weak transcription	Ovary	ovary
3	chr6:15250000-15255000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:15250000-15255600	Weak transcription	Colonic Mucosa	Colon
5	chr6:15250000-15255600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:15250000-15255600	Weak transcription	Right Atrium	heart
7	chr6:15250000-15256200	Weak transcription	Aorta	Aorta
8	chr6:15250000-15256200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:15250000-15256800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:15250000-15262000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:15250200-15256000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:15250200-15259200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:15250400-15255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:15250400-15256600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:15250400-15257000	Enhancers	Thymus	Thymus
16	chr6:15250400-15257000	Enhancers	Dnd41	blood
17	chr6:15250400-15258600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:15250400-15259200	Weak transcription	HMEC	breast
19	chr6:15250600-15255800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:15250800-15256400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:15251000-15256000	Weak transcription	Fetal Brain Female	brain
22	chr6:15251000-15257000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:15251200-15255000	Enhancers	Stomach Mucosa	stomach
24	chr6:15251200-15279400	Weak transcription	A549	lung
25	chr6:15251400-15256200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:15251400-15257400	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:15251800-15255800	Weak transcription	Right Ventricle	heart
28	chr6:15251800-15256000	Weak transcription	Fetal Kidney	kidney
29	chr6:15251800-15256200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:15252200-15255000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:15252200-15257000	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:15252400-15256200	Enhancers	Fetal Heart	heart
33	chr6:15252400-15260000	Genic enhancers	Fetal Thymus	thymus
34	chr6:15252600-15257200	Enhancers	Small Intestine	intestine
35	chr6:15252800-15255800	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:15252800-15256000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:15252800-15256000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:15253200-15255800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:15253200-15256200	Enhancers	Spleen	Spleen
40	chr6:15253200-15262000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:15253200-15262200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:15253400-15257400	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:15253600-15255000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:15253600-15255000	Enhancers	Brain Substantia Nigra	brain
46	chr6:15253600-15255200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
47	chr6:15253600-15257000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr6:15253600-15261600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:15253600-15262200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:15253800-15255000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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