Variant report

Variant	rs9476804
Chromosome Location	chr6:15226060-15226061
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15211420..15213536-chr6:15226040..15230630,4	K562	blood:
2	chr6:15211420..15213536-chr6:15226040..15229427,3	K562	blood:
3	chr6:15223678..15226269-chr6:15228000..15229602,2	K562	blood:
4	chr6:15221003..15223875-chr6:15224055..15226661,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11968994	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12525768	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12527270	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12527312	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12529010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12529719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12530231	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17576261	0.82[CEU][hapmap]
rs1964834	1.00[CEU][hapmap]
rs34766885	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61136001	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61271709	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6904999	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6909967	0.84[YRI][hapmap]
rs6926190	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73357717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357732	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73359689	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73375522	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7746089	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9464772	0.82[AMR][1000 genomes]
rs9464775	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476802	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:15222400-15227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:15222600-15239400	Weak transcription	Right Atrium	heart
4	chr6:15224400-15227400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:15224400-15227600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:15224400-15227600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:15224400-15227800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:15224400-15228000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:15224400-15242000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:15224600-15228000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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