Variant report

Variant	rs6926190
Chromosome Location	chr6:15209734-15209735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15197961..15203179-chr6:15208962..15212023,5	K562	blood:
2	chr6:15208932..15212861-chr6:15365640..15367612,3	K562	blood:
3	chr6:15207140..15215305-chr6:15243300..15250227,33	K562	blood:
4	chr6:15087732..15091365-chr6:15208564..15213428,7	K562	blood:
5	chr6:15208660..15211196-chr6:15241386..15243147,2	MCF-7	breast:
6	chr6:15086750..15092578-chr6:15208564..15214623,13	K562	blood:
7	chr6:15197961..15202582-chr6:15208962..15214320,4	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11968994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524357	1.00[ASN][1000 genomes]
rs12524540	1.00[ASN][1000 genomes]
rs12525768	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12526221	1.00[ASN][1000 genomes]
rs12527270	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527312	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528518	1.00[ASN][1000 genomes]
rs12529010	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529719	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530015	1.00[ASN][1000 genomes]
rs12530231	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193188	1.00[ASN][1000 genomes]
rs13193311	1.00[ASN][1000 genomes]
rs13204596	1.00[ASN][1000 genomes]
rs13213362	1.00[ASN][1000 genomes]
rs13220124	1.00[ASN][1000 genomes]
rs16876112	1.00[ASN][1000 genomes]
rs17576261	1.00[ASN][1000 genomes]
rs28460493	1.00[ASN][1000 genomes]
rs34326651	1.00[ASN][1000 genomes]
rs34766885	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35003605	1.00[ASN][1000 genomes]
rs57013338	1.00[ASN][1000 genomes]
rs59109859	1.00[ASN][1000 genomes]
rs61136001	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61271709	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904999	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357717	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357719	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357720	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357732	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73359689	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73371691	1.00[ASN][1000 genomes]
rs73373454	1.00[ASN][1000 genomes]
rs73375522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375538	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73375555	0.85[AFR][1000 genomes]
rs7746089	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464756	1.00[ASN][1000 genomes]
rs9464758	1.00[ASN][1000 genomes]
rs9464759	1.00[ASN][1000 genomes]
rs9464760	1.00[ASN][1000 genomes]
rs9464772	1.00[ASN][1000 genomes]
rs9464775	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476767	1.00[ASN][1000 genomes]
rs9476773	1.00[ASN][1000 genomes]
rs9476774	1.00[ASN][1000 genomes]
rs9476777	1.00[ASN][1000 genomes]
rs9476778	1.00[ASN][1000 genomes]
rs9476802	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476804	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9718146	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15206800-15210400	Weak transcription	K562	blood
2	chr6:15207400-15210400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15207600-15210200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15208200-15210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:15208400-15210600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:15208400-15210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:15208400-15210800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
9	chr6:15208600-15210400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:15208600-15210600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:15209000-15210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:15209000-15211000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:15209200-15210200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:15209600-15212000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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