Variant report

Variant	rs13204596
Chromosome Location	chr6:15178134-15178135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15177562..15179581-chr6:15194132..15195996,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11968994	1.00[ASN][1000 genomes]
rs12524357	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12524540	1.00[ASN][1000 genomes]
rs12526221	1.00[ASN][1000 genomes]
rs12527270	1.00[ASN][1000 genomes]
rs12527312	1.00[ASN][1000 genomes]
rs12528518	1.00[ASN][1000 genomes]
rs12529010	1.00[ASN][1000 genomes]
rs12529719	1.00[ASN][1000 genomes]
rs12530015	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530231	1.00[ASN][1000 genomes]
rs13193188	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193311	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220124	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876112	1.00[ASN][1000 genomes]
rs17576261	1.00[ASN][1000 genomes]
rs28460493	1.00[ASN][1000 genomes]
rs34326651	1.00[ASN][1000 genomes]
rs34766885	1.00[ASN][1000 genomes]
rs35003605	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57013338	1.00[ASN][1000 genomes]
rs59109859	1.00[ASN][1000 genomes]
rs61136001	1.00[ASN][1000 genomes]
rs61271709	1.00[ASN][1000 genomes]
rs6904999	1.00[ASN][1000 genomes]
rs6926190	1.00[ASN][1000 genomes]
rs73357717	1.00[ASN][1000 genomes]
rs73357719	1.00[ASN][1000 genomes]
rs73357720	1.00[ASN][1000 genomes]
rs73357732	1.00[ASN][1000 genomes]
rs73359689	1.00[ASN][1000 genomes]
rs73371691	1.00[ASN][1000 genomes]
rs73373454	1.00[ASN][1000 genomes]
rs73375522	1.00[ASN][1000 genomes]
rs73375538	1.00[ASN][1000 genomes]
rs7746089	1.00[ASN][1000 genomes]
rs9464756	1.00[ASN][1000 genomes]
rs9464758	1.00[ASN][1000 genomes]
rs9464759	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464760	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464772	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464775	1.00[ASN][1000 genomes]
rs9476767	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476773	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476774	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476776	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9476777	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476778	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476802	1.00[ASN][1000 genomes]
rs9718146	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv819441	chr6:15173846-15179631	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15177600-15181600	Weak transcription	K562	blood

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