Variant report

Variant	rs12527123
Chromosome Location	chr6:46071663-46071664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46057650..46058456-chr6:46071148..46071923,2	MCF-7	breast:
2	chr6:46070726..46073579-chr6:46369585..46372475,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12529353	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13437614	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3734209	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3756804	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56139334	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903000	0.82[EUR][1000 genomes]
rs6926038	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6935013	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73735707	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7766857	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7772559	0.88[ASN][1000 genomes]
rs9296479	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9463179	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463180	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9463181	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9463182	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472687	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472695	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9472696	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9472702	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9472706	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9472710	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9472711	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
4	chr6:46068000-46072000	Weak transcription	Spleen	Spleen
5	chr6:46069800-46072000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:46070400-46073000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:46071000-46073000	Enhancers	Psoas Muscle	Psoas
8	chr6:46071000-46073200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:46071000-46073800	Enhancers	GM12878-XiMat	blood
10	chr6:46071200-46072000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:46071400-46071800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:46071400-46072000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr6:46071400-46073400	Active TSS	Fetal Muscle Leg	muscle
14	chr6:46071400-46073800	Active TSS	Fetal Muscle Trunk	muscle
15	chr6:46071600-46071800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:46071600-46072400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr6:46071600-46072600	Weak transcription	Fetal Thymus	thymus
18	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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