Variant report

Variant	rs13437614
Chromosome Location	chr6:46104391-46104392
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12527123	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529353	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56139334	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926038	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6935013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735707	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7766857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772559	0.98[ASN][1000 genomes]
rs9296479	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9463179	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463180	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463181	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463182	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9472687	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472702	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472706	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472710	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472711	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098600-46105200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:46098800-46104400	Weak transcription	HSMMtube	muscle
3	chr6:46098800-46104800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:46098800-46105200	Weak transcription	Aorta	Aorta
5	chr6:46098800-46105200	Weak transcription	Thymus	Thymus
6	chr6:46098800-46106000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:46098800-46106200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:46098800-46107600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:46098800-46109000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:46098800-46109200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:46098800-46109600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:46098800-46109600	Weak transcription	Fetal Thymus	thymus
13	chr6:46098800-46110200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:46098800-46110200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:46098800-46110400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:46098800-46110400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:46098800-46110600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:46098800-46110600	Weak transcription	Adipose Nuclei	Adipose
19	chr6:46098800-46110600	Weak transcription	Left Ventricle	heart
20	chr6:46098800-46110600	Weak transcription	Dnd41	blood
21	chr6:46098800-46110800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:46098800-46111600	Weak transcription	Right Ventricle	heart
23	chr6:46098800-46112400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:46098800-46112800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:46098800-46112800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:46098800-46112800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:46098800-46113000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:46098800-46117800	Weak transcription	Gastric	stomach
29	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:46101400-46110600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:46101600-46111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:46101600-46112000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:46101800-46112000	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:46101800-46113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:46102000-46110600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:46102200-46104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:46102200-46110400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:46102200-46113000	Weak transcription	Fetal Intestine Large	intestine
39	chr6:46102400-46105400	Weak transcription	Spleen	Spleen
40	chr6:46102400-46105600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:46102400-46107800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:46103200-46105400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:46103200-46105600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:46104200-46105000	Enhancers	GM12878-XiMat	blood
45	chr6:46104200-46105400	Enhancers	Brain Anterior Caudate	brain
46	chr6:46104200-46105800	Enhancers	Brain Substantia Nigra	brain
47	chr6:46104200-46106000	Enhancers	Fetal Heart	heart
48	chr6:46104200-46106400	Enhancers	Brain Cingulate Gyrus	brain
49	chr6:46104200-46106400	Enhancers	Psoas Muscle	Psoas
50	chr6:46104200-46106400	Enhancers	Skeletal Muscle Female	skeletal muscle

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