Variant report

Variant	rs9472696
Chromosome Location	chr6:46108916-46108917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46107057..46110054-chr6:46111949..46114711,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12527123	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529353	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756804	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56139334	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903000	1.00[CEU][hapmap]
rs6926038	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6935013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735707	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7766857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772559	0.98[ASN][1000 genomes]
rs9296479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9463179	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463180	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463181	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463182	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9472687	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472702	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472706	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472710	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9472696	ENPP4	cis	multi-tissue	Pritchard

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098800-46109000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:46098800-46109200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:46098800-46109600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:46098800-46109600	Weak transcription	Fetal Thymus	thymus
5	chr6:46098800-46110200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:46098800-46110200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:46098800-46110400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:46098800-46110400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:46098800-46110600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:46098800-46110600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:46098800-46110600	Weak transcription	Left Ventricle	heart
12	chr6:46098800-46110600	Weak transcription	Dnd41	blood
13	chr6:46098800-46110800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:46098800-46111600	Weak transcription	Right Ventricle	heart
15	chr6:46098800-46112400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:46098800-46112800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:46098800-46112800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:46098800-46112800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:46098800-46113000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:46098800-46117800	Weak transcription	Gastric	stomach
21	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:46101400-46110600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:46101600-46111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:46101600-46112000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:46101800-46112000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:46101800-46113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:46102000-46110600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:46102200-46110400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:46102200-46113000	Weak transcription	Fetal Intestine Large	intestine
30	chr6:46105000-46114600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:46105400-46110600	Weak transcription	Brain Anterior Caudate	brain
32	chr6:46105400-46110600	Weak transcription	Thymus	Thymus
33	chr6:46105400-46115000	Weak transcription	Aorta	Aorta
34	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:46105600-46113200	Weak transcription	Spleen	Spleen
36	chr6:46105600-46128600	Weak transcription	Brain Angular Gyrus	brain
37	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:46105800-46112800	Weak transcription	HSMMtube	muscle
39	chr6:46106000-46110400	Weak transcription	Fetal Heart	heart
40	chr6:46106400-46109200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:46106400-46110600	Weak transcription	Pancreas	Pancrea
42	chr6:46106400-46110600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:46106400-46111000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:46106400-46111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:46106400-46112600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:46106400-46112800	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:46106400-46125400	Weak transcription	Psoas Muscle	Psoas
48	chr6:46106400-46138000	Weak transcription	Lung	lung
49	chr6:46106600-46111200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:46106600-46112800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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