Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLIC5-1	chr6:46070277-46070396	ENSG00000231769.2
2	lnc-CLIC5-1	chr6:46070291-46070396	ENSG00000231769.1
3	lnc-CLIC5-1	chr6:46070305-46070396	ENSG00000231769.1
4	lnc-CLIC5-1	chr6:46070277-46070396	NONHSAT113004
5	lnc-CLIC5-1	chr6:46070305-46070396	ENSG00000231769.2

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12527123	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529353	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13437614	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3734209	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756804	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56139334	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903000	0.82[EUR][1000 genomes]
rs6926038	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6935013	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73735707	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7766857	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772559	0.87[ASN][1000 genomes]
rs9296478	0.92[AFR][1000 genomes]
rs9296479	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9463180	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9463181	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9463182	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9472687	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9472695	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472696	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472702	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9472706	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9472710	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9472711	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:46064600-46071400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
7	chr6:46067800-46070800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:46068000-46072000	Weak transcription	Spleen	Spleen
9	chr6:46068400-46071000	Weak transcription	Psoas Muscle	Psoas
10	chr6:46068400-46071200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:46068600-46070400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:46068800-46070400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:46069800-46070800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:46069800-46071000	Weak transcription	GM12878-XiMat	blood
15	chr6:46069800-46071400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:46069800-46072000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:46070000-46070600	Enhancers	HMEC	breast
18	chr6:46070200-46071000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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