Variant report

Variant	rs12528028
Chromosome Location	chr6:69535258-69535259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12171550	0.81[AFR][1000 genomes]
rs12524100	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12524957	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527569	0.95[EUR][1000 genomes]
rs12528362	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530394	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1880177	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34629272	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4706035	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58433143	0.88[AFR][1000 genomes]
rs62416367	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416368	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416395	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416397	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416398	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62416399	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62416400	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62416401	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62416402	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62416403	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62416405	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62416406	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62418565	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418566	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418567	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418568	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62418570	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62418572	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62418577	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6921402	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7454736	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9446059	0.88[AFR][1000 genomes]
rs9454628	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69528400-69536200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
4	chr6:69534600-69535400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69535200-69536800	Enhancers	Cortex derived primary cultured neurospheres	brain

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