Variant report

Variant	rs62416399
Chromosome Location	chr6:69593298-69593299
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10485432	1.00[ASN][1000 genomes]
rs12196150	1.00[ASN][1000 genomes]
rs12524100	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524957	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526204	0.89[ASN][1000 genomes]
rs12527569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528028	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12528300	1.00[ASN][1000 genomes]
rs12528362	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12530394	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880177	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580444	1.00[ASN][1000 genomes]
rs34629272	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4706035	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4706062	1.00[ASN][1000 genomes]
rs62416367	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416368	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416395	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416397	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416398	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416401	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416402	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416403	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416405	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416406	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416440	1.00[ASN][1000 genomes]
rs62416449	1.00[ASN][1000 genomes]
rs62418264	1.00[ASN][1000 genomes]
rs62418267	1.00[ASN][1000 genomes]
rs62418268	1.00[ASN][1000 genomes]
rs62418270	1.00[ASN][1000 genomes]
rs62418272	1.00[ASN][1000 genomes]
rs62418273	1.00[ASN][1000 genomes]
rs62418276	1.00[ASN][1000 genomes]
rs62418565	0.97[EUR][1000 genomes]
rs62418566	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62418567	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62418568	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418570	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418577	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67653429	1.00[ASN][1000 genomes]
rs6921402	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480159	1.00[ASN][1000 genomes]
rs7454736	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748808	1.00[ASN][1000 genomes]
rs7759377	1.00[ASN][1000 genomes]
rs7767423	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69590600-69600600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69591600-69602400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69592000-69594600	Weak transcription	Fetal Brain Female	brain
4	chr6:69592800-69600000	Weak transcription	Fetal Lung	lung
5	chr6:69593200-69594000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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